Rows: 5,888
Columns: 30
$ case_id <chr> "5fe599", "8689b7", "11f8ea", "b8812a", "893f25",…
$ generation <dbl> 4, 4, 2, 3, 3, 3, 4, 4, 4, 4, 4, 4, 6, 5, 6, 9, 1…
$ date_infection <date> 2014-05-08, NA, NA, 2014-05-04, 2014-05-18, 2014…
$ date_onset <date> 2014-05-13, 2014-05-13, 2014-05-16, 2014-05-18, …
$ date_hospitalisation <date> 2014-05-15, 2014-05-14, 2014-05-18, 2014-05-20, …
$ date_outcome <date> NA, 2014-05-18, 2014-05-30, NA, 2014-05-29, 2014…
$ outcome <chr> NA, "Recover", "Recover", NA, "Recover", "Recover…
$ gender <chr> "m", "f", "m", "f", "m", "f", "f", "f", "m", "f",…
$ age <dbl> 2, 3, 56, 18, 3, 16, 16, 0, 61, 27, 12, 42, 19, 7…
$ age_unit <chr> "years", "years", "years", "years", "years", "yea…
$ age_years <dbl> 2, 3, 56, 18, 3, 16, 16, 0, 61, 27, 12, 42, 19, 7…
$ age_cat <fct> 0-4, 0-4, 50-69, 15-19, 0-4, 15-19, 15-19, 0-4, 5…
$ age_cat5 <fct> 0-4, 0-4, 55-59, 15-19, 0-4, 15-19, 15-19, 0-4, 6…
$ hospital <chr> "Other", "Missing", "St. Mark's Maternity Hospita…
$ lon <dbl> -13.21574, -13.21523, -13.21291, -13.23637, -13.2…
$ lat <dbl> 8.468973, 8.451719, 8.464817, 8.475476, 8.460824,…
$ infector <chr> "f547d6", NA, NA, "f90f5f", "11f8ea", "aec8ec", "…
$ source <chr> "other", NA, NA, "other", "other", "other", "othe…
$ wt_kg <dbl> 27, 25, 91, 41, 36, 56, 47, 0, 86, 69, 67, 84, 68…
$ ht_cm <dbl> 48, 59, 238, 135, 71, 116, 87, 11, 226, 174, 112,…
$ ct_blood <dbl> 22, 22, 21, 23, 23, 21, 21, 22, 22, 22, 22, 22, 2…
$ fever <chr> "no", NA, NA, "no", "no", "no", NA, "no", "no", "…
$ chills <chr> "no", NA, NA, "no", "no", "no", NA, "no", "no", "…
$ cough <chr> "yes", NA, NA, "no", "yes", "yes", NA, "yes", "ye…
$ aches <chr> "no", NA, NA, "no", "no", "no", NA, "no", "no", "…
$ vomit <chr> "yes", NA, NA, "no", "yes", "yes", NA, "yes", "ye…
$ temp <dbl> 36.8, 36.9, 36.9, 36.8, 36.9, 37.6, 37.3, 37.0, 3…
$ time_admission <chr> NA, "09:36", "16:48", "11:22", "12:60", "14:13", …
$ bmi <dbl> 117.18750, 71.81844, 16.06525, 22.49657, 71.41440…
$ days_onset_hosp <dbl> 2, 1, 2, 2, 1, 1, 2, 1, 1, 2, 2, 2, 1, 0, 2, 0, 1…